Gene detail

Detailed information of KXJ28005.1 in Exaiptasia diaphana

Genomic Location: LJWW01000015.1:390629...392706
NR annotation: XP_020893149.1, alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09325	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus OX=10116 GN=Mgat1 PE=2 SV=1
P27808	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus OX=10090 GN=Mgat1 PE=1 SV=1
P27115	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Oryctolagus cuniculus OX=9986 GN=MGAT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002662 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03071 all species →	GNT-I	GNT-I family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR004139 all species →	Family	Glycosyl transferase, family 13	Interproscan
IPR052261 all species →	Family	Glycosyltransferase 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10468 all species →	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0003827 all species →	Molecular Function	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00726	MGAT1; alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	EC:2.4.1.101	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ28005.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

65TPM > 0

2Conditions

48.5Max TPM

19.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	19.42	48.48
whole animal · symbiotic	36	33	19.80	37.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	48.48
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	47.83
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	26.50
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	25.02
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.71
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	24.59
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.85
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.08
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.00
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.46
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	22.23
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.59
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.37
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	21.11
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.82
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.62
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	20.52
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.95
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.36
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.31
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.13
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	19.05
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.94
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.70
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	18.23
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.95
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.76
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.52
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.52
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.09
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.42
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	13.28
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	37.67
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	30.52
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	28.17
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	27.47
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.30
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	24.36
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.46
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.42
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.33
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.91
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.50
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.19
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.92
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.77
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.25
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.81
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.59
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.56
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.46
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.36
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.13
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.45
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.28
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	19.25
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.17
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	18.10
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.94
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.84
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.77
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.62
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	16.60
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.92
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.57
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.