Gene detail

Detailed information of KXJ28913.1 in Exaiptasia diaphana

Genomic Location: LJWW01000008.1:571940...580556
NR annotation: KXJ28913.1, Meiotic recombination protein SPO11 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KXJ28913.1

ATGATGAATGCACARGAGAACGGGGCTCCACACAGCTACGCCGTGCTTGCAGGTGAAGGAGAATCATTAATTCTAGACAATCCAATTCAAGTTACGAGTGGAGCCCTACAAATGGATTGCAAAGCTTCTTGGTTGGCCTGTGTATGTGCTTCGTTGGCAAGTTTTGTTTGTGTGGGAACATGCTACATATATGGTATCTTTTTCCCCGCAATTTTCACAGAATTTCAAGCTGGAAAAGCGAAAACAGCTCTTCCTGGATCGTTTTCAGTTGGATTCCTCACTATTCTATGTCCAGTAGCAGCGATTTTTATTAACCGTTTTGGTTGTCGTGTCGTCATTCCATGCGGTGGATTTATTTCCGCGCTAGGACTTCTGGGATCGTCGTTTGCYCCCAATATCTATGTTCTCTCCTTCACATATGGTTTCCTGGTCGCTTGGGGTTCCTGTCTAATTTACATGGCAGGATTTCTAATGGTTCCATTGTATTTTGATAAACATCGTTCAGCTGCTACTGGTATGGTGTCGGCAGGGCCTGGGGCTGGTGTTCTTATTATGGGTCCTTTAGCACAATTCATGATTGAAAGTCTTGGTTGGAGATCTTCCATGTTGATATTGGCGTCTATTAACTTTGTAACTGGAATTCCTGGATGCGTTATTACACGAAAGACAGCGGTAGAAAATAAGAATCTGTTAGCTCCAAAGAATAGAAATTCTAATGTATGCTTCAATGGGAGAAAATATTGTTCTTTAATTTTATCGTCAATAAACCTGTCTTCACTTAAGAATCCTATGCTGGTGTTAGTGCTTGCTATGAATACAATATTATATATTGGACACTATATGCCCTTGATTCATCTAATAAAATTCGCTGAAGATATAGGAATATCAAGTCACTCGTCTTCGTGGATGTATCCCGTCACTGGTATGATATCGACTGTATGTAGAATACTCACTGGAAAAGTTGGTGACACTGGTCGTGTCTCGTTTTACACCATGTTTCAATGTGGACTGCTACTTATGGCAATAACGCAATTCCTGATGCCATTGGCGTCAAATATTGGTTATCTTTATGGCTATGCTGTTATGCAAGGAATATGTGAAGCCATGTATTTTACATCGGCATATTGTTTAKCGATGTCAGTAGACCCACGACAAGGTCTTGCTTGGCTGATGTTTTTTGCTTCAATTCCTATGTTCCTTGGTCCACCAATTGCAGCACAAAACATCAGACAATTATCAAATGAAGAAGAATTAAATATTGTAAGGATAGAGCAATGTTCTAGAGAAGCGTTAGTTAAAAAGATTGAAAAACTTACAGAGAAAATAGTATCCGAAATAATGGAGAGCAGCCCTCCATGTTTCCACTTCAACAACAGAAATTCGTGGAAAAATATCAAATTTAGTGAATCAGTTGGTCTTGAAATGTTAGATGGCGTTTGTAGTTCTAATGTCAAGTTTGACTCACGGTCCTCYATAACAAAATTTGCTGCAATTCTTTATGTTATTTCTATTTCTCACAACCTCCTTCAAGATAACAAATTTGCCACAAAAAGGGATATCTATTATTCAGATGTAGTATTCTTTGGATCTCAAAGCCTTGTAGATGAGGTTGTAGACACAATTGCTTGTATGCTAAAAGTACCACGGYACTGCTTGCATATACTTGCCACATCTAAAGGATTAATAGCAGGTGATCTAAGATACAGGGAATATGATGGAACTTATGTGGATTGCAGATTTCAAACATCTGGTAAGGGATATCCTGATGTGAATACAAGACGAATGGTGCACAAGTTATGGCACACTCTTCATATTCCTGTTCTTGGTTTGATTGATGCTGATCCACATGGCGTAGAAATCCTTAGTGTTTACAAATATGGTTCTAAGGCACTCAGCTTTGATTCTCATAATCTCACYGTACCAGCAATAAAATGGCTTGGGGTCCTTCCAAGTGACATTGAAAGGTTATCAATATCTGATCATGTGAAAATACCATTGAGTAAACAAGACAGGAAAAAATGTCAATCACTTTTGACTAAACCTTATATTGAAAATCAGCCATCTTGGCAGAAAGAGGTTGAGCTCATGCTGAACAAGGGTTACAAAGCTGAAATTCAAGCGCTGTCTACCATTTCCAGTGATTTCCTGGCTGAGACCTACATCACTGTCAAAATACGCAATGGAAGATGGATATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WTK8	Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2
Q9Y5K1	Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1
A2XFC1	DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21180 all species →	TOP6A-Spo11_Toprim	Topoisomerase 6 subunit A/Spo11, Toprim domain	Domain	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF04406 all species →	TP6A_N	Type IIB DNA topoisomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR002815 all species →	Family	Spo11/DNA topoisomerase VI subunit A	Interproscan
IPR034136 all species →	Domain	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR004085 all species →	Family	DNA topoisomerase VI, subunit A	Interproscan
IPR036078 all species →	Homologous_superfamily	Spo11/DNA topoisomerase VI subunit A superfamily	Interproscan
IPR013049 all species →	Domain	Spo11/DNA topoisomerase VI, subunit A, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10848 all species →	MEIOTIC RECOMBINATION PROTEIN SPO11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0000706 all species →	Biological Process	meiotic DNA double-strand break processing	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0042138 all species →	Biological Process	meiotic DNA double-strand break formation	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006259 all species →	Biological Process	DNA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KXJ28913.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.