Gene detail

Detailed information of KXJ29486.1 in Exaiptasia diaphana

Genomic Location: LJWW01000005.1:473349...474736
NR annotation: XP_020909765.1, coiled-coil domain-containing protein 86 [Exaiptasia diaphana]
Species Exaiptasia diaphana · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIB5	Coiled-coil domain-containing protein 86 OS=Rattus norvegicus OX=10116 GN=Ccdc86 PE=1 SV=1
Q9JJ89	Coiled-coil domain-containing protein 86 OS=Mus musculus OX=10090 GN=Ccdc86 PE=1 SV=2
Q2TBX7	Coiled-coil domain-containing protein 86 OS=Bos taurus OX=9913 GN=CCDC86 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009583 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03879 all species →	Cgr1	Cgr1 family	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005579 all species →	Family	Cgr1-like	Interproscan
IPR026570 all species →	Family	Coiled-coil domain-containing protein 86	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13557 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14822	CGR1; rRNA-processing protein CGR1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of KXJ29486.1 across 72 RNA-seq samples of Exaiptasia diaphana. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

72Samples

64TPM > 0

2Conditions

118.8Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole animal · aposymbiotic	36	32	11.51	49.06
whole animal · symbiotic	36	32	15.69	118.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6202344	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	49.06
SRR6202257	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	23.29
SRR6202203	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.92
SRR6202236	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.53
SRR6202358	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.12
SRR6202255	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	16.07
SRR6202241	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	15.06
SRR6202240	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.68
SRR6202239	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	14.56
SRR6202256	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.81
SRR6202210	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.74
SRR6202204	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.69
SRR6202346	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.55
SRR6202238	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.29
SRR6202207	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.28
SRR6202254	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	12.26
SRR6202258	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	11.16
SRR6202237	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.87
SRR6202260	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.74
SRR6202211	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.45
SRR6202212	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.44
SRR6202209	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	10.36
SRR6202259	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.72
SRR6202363	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.70
SRR6202208	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.44
SRR6202234	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	9.11
SRR6202242	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.92
SRR6202235	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	8.44
SRR6202206	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	7.72
SRR6202261	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	6.80
SRR6202233	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.34
SRR6202205	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	5.22
SRR6202343	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202345	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202357	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202364	whole animal · aposymbiotic	whole animal	not recorded	aposymbiotic	SRP120942	0.00
SRR6202342	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	118.82
SRR6202351	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	25.81
SRR6202356	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	23.47
SRR6202350	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	22.17
SRR6202281	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.51
SRR6202347	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	21.27
SRR6202305	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.58
SRR6202282	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	20.49
SRR6202280	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.92
SRR6202352	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	17.52
SRR6202284	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	15.26
SRR6202283	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.84
SRR6202355	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.47
SRR6202279	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.44
SRR6202277	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	14.23
SRR6202310	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.98
SRR6202285	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.93
SRR6202307	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	13.87
SRR6202304	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.95
SRR6202278	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.45
SRR6202308	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	12.39
SRR6202306	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.93
SRR6202341	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	11.46
SRR6202276	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.78
SRR6202309	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	10.02
SRR6202263	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.69
SRR6202339	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	9.48
SRR6202337	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.11
SRR6202303	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	8.01
SRR6202340	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.82
SRR6202262	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.67
SRR6202338	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	7.34
SRR6202348	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202349	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202353	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00
SRR6202354	whole animal · symbiotic	whole animal	not recorded	symbiotic	SRP120942	0.00

Source: CnidoSite RNA-seq expression matrices (EDIAP_TPM, StringTie quantification over 72 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.