Gene detail

Detailed information of OS493_000020-T1 in Lophelia pertusa

Genomic Location: scaffold_1:230719...240384
NR annotation: KAJ7394218.1, hypothetical protein OS493_000020 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03460	Glutamate synthase [NADH], amyloplastic OS=Medicago sativa OX=3879 PE=1 SV=1
Q0JKD0	Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0681900 PE=2 SV=1
Q9LV03	Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002031 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF04898 all species →	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR050711 all species →	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan
IPR006982 all species →	Domain	Glutamate synthase, central-N	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11938 all species →	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0016040 all species →	Molecular Function	glutamate synthase (NADH) activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0019676 all species →	Biological Process	ammonia assimilation cycle	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000020-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_000020-T1 global co-expression network