Gene detail

Detailed information of OS493_000025-T1 in Lophelia pertusa

Genomic Location: scaffold_1:286038...304504
NR annotation: KAJ7394223.1, Coiled-coil domain-containing protein 58 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4FUI1	Protein MIX23 OS=Bos taurus OX=9913 GN=MIX23 PE=2 SV=1
Q4VC31	Protein MIX23 OS=Homo sapiens OX=9606 GN=MIX23 PE=1 SV=1
Q8R3Q6	Protein MIX23 OS=Mus musculus OX=10090 GN=Mix23 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006546 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09774 all species →	MIX23	Intermembrane space protein MIX23	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019171 all species →	Family	Intermembrane space protein MIX23	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31905 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 58	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005758 all species →	Cellular Component	mitochondrial intermembrane space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000025-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000025-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

43.6Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.71	33.67
polyp at pH7 6	18	16	10.48	26.71
coral polyp · control treatment	16	16	12.83	24.60
coral polyp · oil and dispersant treatment	16	16	11.28	43.55
coral polyp · oil treatment	16	16	10.05	18.54
coral polyp · dispersant treatment	16	16	9.75	25.89
Polyp	10	9	18.31	43.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	43.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.