Gene detail

Detailed information of OS493_000064-T1 in Lophelia pertusa

Genomic Location: scaffold_1:690206...691860
NR annotation: KAJ7394262.1, hypothetical protein OS493_000064 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35331	Pyridoxal kinase OS=Rattus norvegicus OX=10116 GN=Pdxk PE=1 SV=1
Q8K183	Pyridoxal kinase OS=Mus musculus OX=10090 GN=Pdxk PE=1 SV=1
O46560	Pyridoxal kinase OS=Sus scrofa OX=9823 GN=PDXK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004079 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_000064-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR004625 all species →	Family	Pyridoxine kinase	Interproscan
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10534 all species →	PYRIDOXAL KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008478 all species →	Molecular Function	pyridoxal kinase activity	Interproscan
GO:0009443 all species →	Biological Process	pyridoxal 5'-phosphate salvage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000064-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000064-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

33.4Max TPM

10.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.87	11.89
polyp at pH7 6	18	16	8.23	15.96
coral polyp · control treatment	16	16	15.34	29.68
coral polyp · oil and dispersant treatment	16	16	11.91	24.77
coral polyp · oil treatment	16	16	12.32	26.30
coral polyp · dispersant treatment	16	16	9.01	22.80
Polyp	10	9	11.01	33.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	33.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.