Gene detail

Detailed information of OS493_000082-T1 in Lophelia pertusa

Genomic Location: scaffold_1:966021...969570
NR annotation: KAJ7394280.1, hypothetical protein OS493_000082 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DE40	Glycoprotein endo-alpha-1,2-mannosidase OS=Xenopus laevis OX=8355 GN=manea PE=2 SV=1
Q5SRI9	Glycoprotein endo-alpha-1,2-mannosidase OS=Homo sapiens OX=9606 GN=MANEA PE=1 SV=1
Q5RD93	Glycoprotein endo-alpha-1,2-mannosidase OS=Pongo abelii OX=9601 GN=MANEA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008039 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16317 all species →	Glyco_hydro_99	Glycosyl hydrolase family 99	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026071 all species →	Family	Glycosyl hydrolase family 99	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13572 all species →	ENDO-ALPHA-1,2-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016798 all species →	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000082-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000082-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

9.4Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	5.38	8.31
polyp at pH7 6	18	16	4.71	7.62
coral polyp · control treatment	16	16	5.36	9.40
coral polyp · oil and dispersant treatment	16	14	2.34	4.56
coral polyp · oil treatment	16	16	4.75	6.91
coral polyp · dispersant treatment	16	12	2.05	4.83
Polyp	10	9	3.86	6.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.