Gene detail

Detailed information of OS493_000083-T1 in Lophelia pertusa

Genomic Location: scaffold_1:969633...970199
NR annotation: KAJ7394281.1, hypothetical protein OS493_000083 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NXH2	Glycoprotein endo-alpha-1,2-mannosidase OS=Mus musculus OX=10090 GN=Manea PE=2 SV=1
Q5GF25	Glycoprotein endo-alpha-1,2-mannosidase OS=Rattus norvegicus OX=10116 GN=Manea PE=1 SV=1
Q1L8D2	Glycoprotein endo-alpha-1,2-mannosidase-like protein OS=Danio rerio OX=7955 GN=maneal PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16317 all species →	Glyco_hydro_99	Glycosyl hydrolase family 99	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026071 all species →	Family	Glycosyl hydrolase family 99	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13572 all species →	ENDO-ALPHA-1,2-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0016798 all species →	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000083-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000083-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

25.3Max TPM

7.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.50	25.30
polyp at pH7 6	18	18	10.81	22.38
coral polyp · control treatment	16	16	7.77	15.30
coral polyp · oil and dispersant treatment	16	16	3.86	6.50
coral polyp · oil treatment	16	16	7.45	10.10
coral polyp · dispersant treatment	16	16	2.73	7.08
Polyp	10	10	11.72	19.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.23
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.22
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.