Gene detail

Detailed information of OS493_000108-T1 in Lophelia pertusa

Genomic Location: scaffold_1:1195588...1201929
NR annotation: KAJ7394306.1, ATP synthase subunit O, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24439	ATP synthase subunit O, mitochondrial OS=Drosophila melanogaster OX=7227 GN=ATPsynO PE=2 SV=2
Q9DB20	ATP synthase peripheral stalk subunit OSCP, mitochondrial OS=Mus musculus OX=10090 GN=Atp5po PE=1 SV=1
Q5RD23	ATP synthase peripheral stalk subunit OSCP, mitochondrial OS=Pongo abelii OX=9601 GN=ATP5PO PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00213 all species →	OSCP	ATP synthase delta (OSCP) subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000711 all species →	Family	ATPase, OSCP/delta subunit	Interproscan
IPR026015 all species →	Homologous_superfamily	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	Interproscan
IPR020781 all species →	Conserved_site	ATPase, OSCP/delta subunit, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11910 all species →	ATP SYNTHASE DELTA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000274 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase, stator stalk	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0042776 all species →	Biological Process	proton motive force-driven mitochondrial ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02137	ATPeF0O, ATP5O, ATP5; F-type H+-transporting ATPase subunit O	-	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000108-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

767.2Max TPM

195.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	210.14	308.83
polyp at pH7 6	18	18	222.08	323.19
coral polyp · control treatment	16	16	200.43	767.16
coral polyp · oil and dispersant treatment	16	16	175.10	736.16
coral polyp · oil treatment	16	16	178.19	219.35
coral polyp · dispersant treatment	16	16	125.08	213.57
Polyp	10	10	290.83	443.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	308.83
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	288.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	285.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	270.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	232.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	228.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	227.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	227.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	220.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	211.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	167.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	164.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	160.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	150.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	323.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	304.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	253.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	251.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	238.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	231.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	227.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	219.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	218.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	213.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	210.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	205.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	202.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	195.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	189.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	186.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	179.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	145.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	767.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	210.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	205.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	196.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	181.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	177.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	175.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	158.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	157.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	155.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	152.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	125.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	736.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	219.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	213.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	207.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	198.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	192.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	192.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	183.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	178.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	176.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	166.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	166.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	156.24
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	148.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	213.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	180.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	142.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	122.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	443.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	395.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	319.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	294.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	276.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	269.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	244.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	229.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	225.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	210.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.