Gene detail

Detailed information of OS493_000137-T1 in Lophelia pertusa

Genomic Location: scaffold_1:1542509...1546871
NR annotation: KAJ7394333.1, SH3 domain-binding glutamic acid-rich-like protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NFP5	SH3 domain-binding glutamic acid-rich protein homolog OS=Drosophila melanogaster OX=7227 GN=Sh3beta PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004199 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04908 all species →	SH3BGR	SH3-binding, glutamic acid-rich protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006993 all species →	Family	SH3-binding, glutamic acid-rich protein	Interproscan
IPR051033 all species →	Family	SH3 domain-binding glutamic acid-rich protein	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12232 all species →	SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000137-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000137-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

49.7Max TPM

19.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.66	33.64
polyp at pH7 6	18	17	22.29	49.73
coral polyp · control treatment	16	16	24.52	49.42
coral polyp · oil and dispersant treatment	16	15	14.22	27.19
coral polyp · oil treatment	16	16	20.39	37.02
coral polyp · dispersant treatment	16	16	16.10	26.52
Polyp	10	10	15.74	34.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.93
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.12
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.49
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	20.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.