Gene detail

Detailed information of OS493_000138-T1 in Lophelia pertusa

Genomic Location: scaffold_1:1556199...1564386
NR annotation: KAJ7394334.1, hypothetical protein OS493_000138 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NYU7	Uracil phosphoribosyltransferase homolog OS=Danio rerio OX=7955 GN=uprt PE=2 SV=1
Q32LA4	Uracil phosphoribosyltransferase homolog OS=Bos taurus OX=9913 GN=UPRT PE=2 SV=1
B1AVZ0	Uracil phosphoribosyltransferase homolog OS=Mus musculus OX=10090 GN=Uprt PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14681 all species →	UPRTase	Uracil phosphoribosyltransferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000836 all species →	Domain	Phosphoribosyltransferase domain	Interproscan
IPR029057 all species →	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10285 all species →	URIDINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0050262 all species →	Molecular Function	ribosylnicotinamide kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00761	upp, UPRT; uracil phosphoribosyltransferase	EC:2.4.2.9	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000138-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

34.7Max TPM

13.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.53	17.16
polyp at pH7 6	18	16	10.76	18.48
coral polyp · control treatment	16	16	19.09	30.59
coral polyp · oil and dispersant treatment	16	16	15.10	24.80
coral polyp · oil treatment	16	16	16.73	29.14
coral polyp · dispersant treatment	16	15	13.59	34.72
Polyp	10	9	7.34	14.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.09
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.19
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.