Gene detail

Detailed information of OS493_000166-T1 in Lophelia pertusa

Genomic Location: scaffold_1:1909105...1910020
NR annotation: KAJ7394360.1, CASP8 associated protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009014 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_000166-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039674 all species →	Family	CASP8-associated protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15489 all species →	CASPASE 8 ASSOCIATED PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006919 all species →	Biological Process	obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan
GO:0008625 all species →	Biological Process	extrinsic apoptotic signaling pathway via death domain receptors	Interproscan
GO:0016605 all species →	Cellular Component	PML body	Interproscan
GO:0036337 all species →	Biological Process	Fas signaling pathway	Interproscan
GO:0097190 all species →	Biological Process	apoptotic signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000166-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000166-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

25.8Max TPM

9.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.55	15.83
polyp at pH7 6	18	15	11.52	24.87
coral polyp · control treatment	16	16	11.79	20.18
coral polyp · oil and dispersant treatment	16	16	6.78	14.53
coral polyp · oil treatment	16	16	12.21	18.51
coral polyp · dispersant treatment	16	16	6.42	12.53
Polyp	10	9	9.26	25.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.