Gene detail

Detailed information of OS493_000167-T1 in Lophelia pertusa

Genomic Location: scaffold_1:1913385...1925090
NR annotation: KAJ7394361.1, Protein fam76b [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TAV0	Protein FAM76A OS=Homo sapiens OX=9606 GN=FAM76A PE=1 SV=1
Q5EA89	Protein FAM76A OS=Bos taurus OX=9913 GN=FAM76A PE=2 SV=1
Q922G2	Protein FAM76A OS=Mus musculus OX=10090 GN=Fam76a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006188 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16046 all species →	FAM76	FAM76 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032017 all species →	Family	FAM76 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46176 all species →	LD21662P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000167-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000167-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

41.7Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.96	9.43
polyp at pH7 6	18	17	5.00	8.66
coral polyp · control treatment	16	16	9.31	41.75
coral polyp · oil and dispersant treatment	16	16	4.42	16.63
coral polyp · oil treatment	16	16	6.29	9.68
coral polyp · dispersant treatment	16	16	4.79	10.44
Polyp	10	8	3.67	8.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.89
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.