Gene detail

Detailed information of OS493_000176-T1 in Lophelia pertusa

Genomic Location: scaffold_1:1986370...1988045
NR annotation: KAJ7394369.1, Mitochondrial import inner membrane translocase subunit Tim13 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DGJ3	Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=7955 GN=timm13 PE=3 SV=1
Q9Y5L4	Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens OX=9606 GN=TIMM13 PE=1 SV=1
P62075	Mitochondrial import inner membrane translocase subunit Tim13 OS=Mus musculus OX=10090 GN=Timm13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004499 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02953 all species →	zf-Tim10_DDP	Tim10/DDP family zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035427 all species →	Homologous_superfamily	Tim10-like domain superfamily	Interproscan
IPR004217 all species →	Domain	Tim10-like	Interproscan

PANTHER

No PANTHER signature was detected for OS493_000176-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_000176-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17781	TIM13; mitochondrial import inner membrane translocase subunit TIM13	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000176-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

134.0Max TPM

26.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.29	41.54
polyp at pH7 6	18	16	25.57	50.94
coral polyp · control treatment	16	16	29.18	55.74
coral polyp · oil and dispersant treatment	16	16	30.49	134.01
coral polyp · oil treatment	16	16	26.15	45.66
coral polyp · dispersant treatment	16	16	18.38	32.54
Polyp	10	10	37.55	61.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.10
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.83
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	61.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	55.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	54.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	43.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	35.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.32

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.