Gene detail

Detailed information of OS493_000186-T1 in Lophelia pertusa

Genomic Location: scaffold_1:2120403...2122946
NR annotation: KAJ7394378.1, fts3-like protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42577	Soma ferritin OS=Lymnaea stagnalis OX=6523 PE=2 SV=2
P85838	Ferritin, heavy subunit OS=Trematomus bernacchii OX=40690 PE=1 SV=1
P85837	Ferritin, heavy subunit OS=Trematomus newnesi OX=35730 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00210 all species →	Ferritin	Ferritin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001519 all species →	Family	Ferritin	Interproscan
IPR009040 all species →	Domain	Ferritin-like diiron domain	Interproscan
IPR008331 all species →	Domain	Ferritin/DPS protein domain	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR012347 all species →	Homologous_superfamily	Ferritin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11431 all species →	FERRITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006826 all species →	Biological Process	iron ion transport	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0006880 all species →	Biological Process	intracellular sequestering of iron ion	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0008199 all species →	Molecular Function	ferric iron binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00522	FTH1; ferritin heavy chain	EC:1.16.3.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000186-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

76TPM > 0

7Conditions

44.8Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	1.43	6.54
polyp at pH7 6	18	9	1.70	11.74
coral polyp · control treatment	16	13	3.39	11.33
coral polyp · oil and dispersant treatment	16	12	5.44	44.83
coral polyp · oil treatment	16	12	2.67	13.63
coral polyp · dispersant treatment	16	13	4.54	17.47
Polyp	10	6	0.49	2.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.21
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.