Gene detail

Detailed information of OS493_000204-T1 in Lophelia pertusa

Genomic Location: scaffold_1:2288847...2292166
NR annotation: KAJ7394395.1, EEF1A lysine methyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKT6	EEF1A lysine methyltransferase 1 OS=Gallus gallus OX=9031 GN=EEF1AKMT1 PE=2 SV=1
Q9CY45	EEF1A lysine methyltransferase 1 OS=Mus musculus OX=10090 GN=Eef1akmt1 PE=1 SV=1
Q6GN98	EEF1A lysine methyltransferase 1 OS=Xenopus laevis OX=8355 GN=eef1akmt1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011457 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10237 all species →	N6-adenineMlase	Probable N6-adenine methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019369 all species →	Family	Protein-lysine N-methyltransferase Efm5/EEF1AKMT1	Interproscan
IPR041370 all species →	Family	Methyltransferase EEF1AKMT1/ZCCHC4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13200 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22855	EEF1AKMT1, EFM5; EEF1A lysine methyltransferase 1	EC:2.1.1.-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000204-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

17.2Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	4.75	13.24
polyp at pH7 6	18	11	5.27	15.33
coral polyp · control treatment	16	16	7.19	12.23
coral polyp · oil and dispersant treatment	16	15	4.33	8.04
coral polyp · oil treatment	16	16	5.97	12.44
coral polyp · dispersant treatment	16	16	4.29	11.45
Polyp	10	7	7.09	17.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.