Gene detail

Detailed information of OS493_000206-T1 in Lophelia pertusa

Genomic Location: scaffold_1:2300262...2308220
NR annotation: KAJ7394397.1, UTP11-like, U3 small nucleolar ribonucleoprotein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CZJ1	Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus OX=10090 GN=Utp11 PE=2 SV=1
Q9Y3A2	Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens OX=9606 GN=UTP11 PE=1 SV=2
Q8R5K5	Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus OX=10116 GN=Utp11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007879 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03998 all species →	Utp11	Utp11 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007144 all species →	Family	Small-subunit processome, Utp11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12838 all species →	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14769	UTP11; U3 small nucleolar RNA-associated protein 11	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000206-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

50.1Max TPM

20.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.46	39.90
polyp at pH7 6	18	18	29.21	45.19
coral polyp · control treatment	16	16	17.93	35.81
coral polyp · oil and dispersant treatment	16	16	14.78	22.64
coral polyp · oil treatment	16	16	16.93	22.08
coral polyp · dispersant treatment	16	16	9.34	20.48
Polyp	10	10	32.67	50.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.85
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.95
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.90
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	50.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	43.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	35.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	31.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.