Gene detail

Detailed information of OS493_000212-T1 in Lophelia pertusa

Genomic Location: scaffold_1:2379332...2379649
NR annotation: KAJ7394403.1, hypothetical protein OS493_000212 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07883 all species →	Cupin_2	Cupin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR013096 all species →	Domain	Cupin 2, conserved barrel	Interproscan
IPR052535 all species →	Family	Bacilysin biosynthesis H2HPP isomerase	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40112 all species →	H2HPP ISOMERASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_000212-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000212-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000212-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

30.1Max TPM

9.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.69	19.17
polyp at pH7 6	18	18	11.37	24.12
coral polyp · control treatment	16	16	10.78	30.05
coral polyp · oil and dispersant treatment	16	16	6.30	12.18
coral polyp · oil treatment	16	16	9.84	20.78
coral polyp · dispersant treatment	16	15	4.79	10.91
Polyp	10	9	6.43	22.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.