Gene detail

Detailed information of OS493_000251-T1 in Lophelia pertusa

Genomic Location: scaffold_1:2851985...2861409
NR annotation: KAJ7394441.1, CTD nuclear envelope phosphatase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U395	CTD nuclear envelope phosphatase 1A OS=Danio rerio OX=7955 GN=ctdnep1a PE=2 SV=1
Q28HW9	CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis OX=8364 GN=ctdnep1 PE=2 SV=1
Q8JIL9	CTD nuclear envelope phosphatase 1 OS=Xenopus laevis OX=8355 GN=ctdnep1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan
IPR050365 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM50	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR011948 all species →	Domain	Dullard phosphatase domain, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12210 all species →	DULLARD PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17617	CTDNEP1, DULLARD, NEM1; CTD nuclear envelope phosphatase 1	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000251-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

25.3Max TPM

10.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.30	17.43
polyp at pH7 6	18	17	9.51	13.45
coral polyp · control treatment	16	16	14.39	25.32
coral polyp · oil and dispersant treatment	16	16	12.51	18.57
coral polyp · oil treatment	16	16	11.95	19.63
coral polyp · dispersant treatment	16	16	10.80	19.78
Polyp	10	10	6.33	12.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.89
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.12
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.55
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.03

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.