Gene detail

Detailed information of OS493_000289-T1 in Lophelia pertusa

Genomic Location: scaffold_1:3554182...3554835
NR annotation: KAJ7394478.1, Forkhead box protein L2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4VUF1	Forkhead box protein L2 OS=Bramus lutescens OX=3370998 GN=FOXL2 PE=3 SV=1
O88470	Forkhead box protein L2 OS=Mus musculus OX=10090 GN=Foxl2 PE=1 SV=2
Q6VFT5	Forkhead box protein L2 OS=Oryctolagus cuniculus OX=9986 GN=FOXL2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000451 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR047515 all species →	Domain	Forkhead box protein L2, forkhead domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR050211 all species →	Family	Forkhead box domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11829 all species →	FORKHEAD BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09405	FOXL; forkhead box protein L	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000289-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

209.4Max TPM

41.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	40.11	103.16
polyp at pH7 6	18	18	28.77	64.95
coral polyp · control treatment	16	16	71.58	209.41
coral polyp · oil and dispersant treatment	16	16	24.16	78.49
coral polyp · oil treatment	16	16	33.11	112.39
coral polyp · dispersant treatment	16	16	55.61	204.65
Polyp	10	10	41.01	92.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.41
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	209.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	167.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	138.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.54
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.29
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	112.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	204.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	92.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	85.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	65.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	57.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	53.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.