Gene detail

Detailed information of OS493_000301-T1 in Lophelia pertusa

Genomic Location: scaffold_1:3735862...3739735
NR annotation: KAJ7394488.1, NmrA-like domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZID0	NmrA-like family domain-containing protein 1 OS=Gallus gallus OX=9031 GN=NMRAL1 PE=2 SV=1
Q0VCN1	NmrA-like family domain-containing protein 1 OS=Bos taurus OX=9913 GN=NMRAL1 PE=2 SV=1
Q8K2T1	NmrA-like family domain-containing protein 1 OS=Mus musculus OX=10090 GN=Nmral1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007350 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05368 all species →	NmrA	NmrA-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008030 all species →	Domain	NmrA-like domain	Interproscan
IPR051164 all species →	Family	NmrA-like oxidoreductase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42748 all species →	NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000301-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000301-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

55.6Max TPM

17.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.74	45.93
polyp at pH7 6	18	18	22.01	37.70
coral polyp · control treatment	16	16	12.48	27.69
coral polyp · oil and dispersant treatment	16	15	8.56	22.75
coral polyp · oil treatment	16	16	15.67	38.66
coral polyp · dispersant treatment	16	16	11.25	23.66
Polyp	10	10	24.45	55.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	55.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	45.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	35.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	30.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.