Gene detail

Detailed information of OS493_000304-T1 in Lophelia pertusa

Genomic Location: scaffold_1:3748560...3750878
NR annotation: KAJ7394490.1, hypothetical protein OS493_000304 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28HR4	UbiA prenyltransferase domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubiad1 PE=2 SV=1
Q9DC60	UbiA prenyltransferase domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ubiad1 PE=2 SV=1
Q9V3R8	UbiA prenyltransferase domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=heix PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002317 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01040 all species →	UbiA	UbiA prenyltransferase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026046 all species →	Family	UbiA prenyltransferase domain containing protein 1	Interproscan
IPR000537 all species →	Family	UbiA prenyltransferase family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13929 all species →	1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004659 all species →	Molecular Function	prenyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016765 all species →	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0009234 all species →	Biological Process	menaquinone biosynthetic process	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0032194 all species →	Biological Process	ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	Interproscan
GO:0042371 all species →	Biological Process	vitamin K biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00810	UBIAD1; menadiol prenyltransferase	EC:2.5.1.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000304-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

9.2Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.69	3.10
polyp at pH7 6	18	16	2.26	4.29
coral polyp · control treatment	16	16	3.84	8.17
coral polyp · oil and dispersant treatment	16	16	2.31	5.63
coral polyp · oil treatment	16	16	3.69	9.23
coral polyp · dispersant treatment	16	16	2.50	6.96
Polyp	10	9	2.13	3.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.25
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.