Gene detail

Detailed information of OS493_000452-T1 in Lophelia pertusa

Genomic Location: scaffold_1:5420741...5433649
NR annotation: KAJ7394633.1, hypothetical protein OS493_000452 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5BKL1	UPF0415 protein C7orf25 homolog OS=Xenopus tropicalis OX=8364 GN=TGas015c11.1 PE=2 SV=1
Q08AW5	UPF0415 protein C7orf25 homolog OS=Xenopus laevis OX=8355 PE=2 SV=1
Q91WD4	UPF0415 protein C7orf25 homolog OS=Mus musculus OX=10090 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004614 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18474 all species →	DUF5614	Family of unknown function (DUF5614)	Domain	Interproscan
PF07000 all species →	DUF1308	Protein of unknown function (DUF1308)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041076 all species →	Domain	Domain of unknown function DUF5614	Interproscan
IPR010733 all species →	Domain	Domain of unknown function DUF1308	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13379 all species →	UNCHARACTERIZED DUF1308	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_000452-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000452-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000452-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

17.7Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.17	10.99
polyp at pH7 6	18	18	8.36	14.59
coral polyp · control treatment	16	16	8.39	17.67
coral polyp · oil and dispersant treatment	16	16	4.93	8.43
coral polyp · oil treatment	16	16	8.74	13.25
coral polyp · dispersant treatment	16	16	6.20	14.01
Polyp	10	9	7.04	12.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.28
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.54
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.50
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.