Gene detail

Detailed information of OS493_000470-T1 in Lophelia pertusa

Genomic Location: scaffold_1:5771192...5792758
NR annotation: KAJ7394650.1, sterol carrier protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O62742	Sterol carrier protein 2 OS=Oryctolagus cuniculus OX=9986 GN=SCP2 PE=1 SV=1
P32020	Sterol carrier protein 2 OS=Mus musculus OX=10090 GN=Scp2 PE=1 SV=3
P11915	Sterol carrier protein 2 OS=Rattus norvegicus OX=10116 GN=Scp2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan
PF02803 all species →	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020613 all species →	Conserved_site	Thiolase, conserved site	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan
IPR020617 all species →	Domain	Thiolase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42870 all species →	ACETYL-COA C-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08764	SCP2, SCPX; sterol carrier protein 2	EC:2.3.1.176	PPAR signaling pathway	ko03320	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000470-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

68.6Max TPM

37.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.85	47.72
polyp at pH7 6	18	18	34.60	47.30
coral polyp · control treatment	16	16	45.24	68.62
coral polyp · oil and dispersant treatment	16	16	38.64	60.96
coral polyp · oil treatment	16	16	43.73	57.48
coral polyp · dispersant treatment	16	16	32.26	46.57
Polyp	10	10	31.92	56.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.11
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	56.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.16
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	37.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	34.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.