Gene detail

Detailed information of OS493_000563-T1 in Lophelia pertusa

Genomic Location: scaffold_1:7627012...7635258
NR annotation: KAJ7394734.1, hypothetical protein OS493_000563 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001059 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_000563-T1 in Lophelia pertusa.

InterPro

No InterPro signature was recorded for OS493_000563-T1 in Lophelia pertusa.

PANTHER

PANTHER term	Description	Source
PTHR38696 all species →	-	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_000563-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000563-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000563-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

17.3Max TPM

7.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.37	7.14
polyp at pH7 6	18	17	5.34	14.27
coral polyp · control treatment	16	16	8.85	16.13
coral polyp · oil and dispersant treatment	16	16	10.38	16.70
coral polyp · oil treatment	16	16	6.95	13.62
coral polyp · dispersant treatment	16	16	10.50	17.33
Polyp	10	10	4.71	8.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.70
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.