Gene detail

Detailed information of OS493_000609-T1 in Lophelia pertusa

Genomic Location: scaffold_1:8597027...8620989
NR annotation: KAJ7394775.1, hypothetical protein OS493_000609 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D2N4	Dystrobrevin alpha OS=Mus musculus OX=10090 GN=Dtna PE=1 SV=2
O70585	Dystrobrevin beta OS=Mus musculus OX=10090 GN=Dtnb PE=1 SV=3
Q9Y4J8	Dystrobrevin alpha OS=Homo sapiens OX=9606 GN=DTNA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09069 all species →	EF-hand_3	EF-hand	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF09068 all species →	EF-hand_2	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015154 all species →	Domain	EF-hand domain, type 2	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR050774 all species →	Family	KCMF1 and Dystrophin	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR015153 all species →	Domain	EF-hand domain, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268 all species →	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0099536 all species →	Biological Process	synaptic signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000609-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000609-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

69.6Max TPM

37.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	37.94	60.49
polyp at pH7 6	18	18	32.73	53.79
coral polyp · control treatment	16	16	44.83	69.59
coral polyp · oil and dispersant treatment	16	16	42.01	66.84
coral polyp · oil treatment	16	16	39.70	63.72
coral polyp · dispersant treatment	16	16	41.49	66.63
Polyp	10	10	19.49	30.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.84
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.63
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.