Gene detail

Detailed information of OS493_000723-T1 in Lophelia pertusa

Genomic Location: scaffold_1:9999603...10009710
NR annotation: KAJ7394886.1, Serine/threonine-protein kinase 40 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N2I9	Serine/threonine-protein kinase 40 OS=Homo sapiens OX=9606 GN=STK40 PE=1 SV=2
Q7T0B1	Serine/threonine-protein kinase 40 OS=Gallus gallus OX=9031 GN=STK40 PE=2 SV=1
Q7TNL3	Serine/threonine-protein kinase 40 OS=Mus musculus OX=10090 GN=Stk40 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024104 all species →	Family	Pseudokinase tribbles family/serine-threonine-protein kinase 40	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR024236 all species →	Family	Serine/threonine-protein kinase 40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22961 all species →	SER/THR PROTEIN KINASE-TRB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16312	STK40, SHIK; serine/threonine-protein kinase 40	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000723-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

16.3Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.66	9.93
polyp at pH7 6	18	16	6.21	9.10
coral polyp · control treatment	16	16	10.05	14.51
coral polyp · oil and dispersant treatment	16	16	8.70	16.27
coral polyp · oil treatment	16	16	8.09	14.02
coral polyp · dispersant treatment	16	16	8.15	12.79
Polyp	10	9	3.22	6.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.89
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.08
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.