Gene detail

Detailed information of OS493_000793-T1 in Lophelia pertusa

Genomic Location: scaffold_2:290566...292928
NR annotation: KAJ7387464.1, hypothetical protein OS493_000793 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5AF03	Glyoxalase 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=GLX3 PE=1 SV=1
Q09675	Glutathione-independent glyoxalase hsp3102 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hsp3102 PE=1 SV=1
O74914	Glutathione-independent glyoxalase hsp3101 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hsp3101 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008137 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01965 all species →	DJ-1_PfpI	DJ-1/PfpI family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR050325 all species →	Family	Protein/nucleic acid deglycase	Interproscan
IPR002818 all species →	Domain	DJ-1/PfpI	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48094 all species →	PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019172 all species →	Molecular Function	glyoxalase III activity	Interproscan
GO:0019243 all species →	Biological Process	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000793-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000793-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

504.8Max TPM

243.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	344.23	457.88
polyp at pH7 6	18	18	321.96	372.45
coral polyp · control treatment	16	16	184.47	399.93
coral polyp · oil and dispersant treatment	16	16	179.34	340.80
coral polyp · oil treatment	16	16	210.52	362.63
coral polyp · dispersant treatment	16	16	147.89	309.26
Polyp	10	10	327.56	504.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	457.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	456.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	415.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	408.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	383.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	374.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	354.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	351.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	341.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	337.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	336.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	329.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	289.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	276.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	272.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	272.15
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	270.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	268.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	372.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	362.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	358.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	353.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	349.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	346.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	342.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	339.74
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	325.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	325.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	318.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	313.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	306.50
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	302.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	287.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	280.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	255.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	253.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	399.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	274.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	244.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	227.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	224.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	207.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	195.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	192.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	185.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	160.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	152.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	340.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	326.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	254.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	232.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	193.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	179.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	178.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	166.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	362.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	309.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	302.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	252.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	249.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	223.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	216.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	214.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	194.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	190.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	184.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	181.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	309.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	263.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	256.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	253.36
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	148.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	135.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	129.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	93.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.67
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	504.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	408.43
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	351.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	338.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	335.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	324.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	319.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	297.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	241.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	153.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.