Gene detail

Detailed information of OS493_000832-T1 in Lophelia pertusa

Genomic Location: scaffold_2:789490...792350
NR annotation: KAJ7387502.1, Mitochondrial enolase super member 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INX4	Mitochondrial enolase superfamily member 1 OS=Xenopus laevis OX=8355 GN=enosf1 PE=2 SV=1
Q7L5Y1	Mitochondrial enolase superfamily member 1 OS=Homo sapiens OX=9606 GN=ENOSF1 PE=1 SV=1
Q5RAT4	Mitochondrial enolase superfamily member 1 OS=Pongo abelii OX=9601 GN=ENOSF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13378 all species →	MR_MLE_C	Enolase C-terminal domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029065 all species →	Domain	Enolase C-terminal domain-like	Interproscan
IPR036849 all species →	Homologous_superfamily	Enolase-like, C-terminal domain superfamily	Interproscan
IPR046945 all species →	Family	L-rhamnonate dehydratase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13794 all species →	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016052 all species →	Biological Process	carbohydrate catabolic process	Interproscan
GO:0016836 all species →	Molecular Function	hydro-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000832-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000832-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

49.3Max TPM

14.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.04	21.41
polyp at pH7 6	18	17	13.54	21.66
coral polyp · control treatment	16	16	15.87	28.91
coral polyp · oil and dispersant treatment	16	16	13.48	31.03
coral polyp · oil treatment	16	16	16.83	29.27
coral polyp · dispersant treatment	16	16	9.67	21.69
Polyp	10	9	17.80	49.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	49.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.