Gene detail

Detailed information of OS493_000833-T1 in Lophelia pertusa

Genomic Location: scaffold_2:792913...798451
NR annotation: KAJ7387503.1, Mitochondrial enolase super member 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INX4	Mitochondrial enolase superfamily member 1 OS=Xenopus laevis OX=8355 GN=enosf1 PE=2 SV=1
Q5RAT4	Mitochondrial enolase superfamily member 1 OS=Pongo abelii OX=9601 GN=ENOSF1 PE=2 SV=1
Q7L5Y1	Mitochondrial enolase superfamily member 1 OS=Homo sapiens OX=9606 GN=ENOSF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02746 all species →	MR_MLE_N	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	Domain	Interproscan
PF13378 all species →	MR_MLE_C	Enolase C-terminal domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013342 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, C-terminal	Interproscan
IPR018110 all species →	Conserved_site	Mandelate racemase/muconate lactonizing enzyme, conserved site	Interproscan
IPR046945 all species →	Family	L-rhamnonate dehydratase-like	Interproscan
IPR029017 all species →	Homologous_superfamily	Enolase-like, N-terminal	Interproscan
IPR036849 all species →	Homologous_superfamily	Enolase-like, C-terminal domain superfamily	Interproscan
IPR013341 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain	Interproscan
IPR029065 all species →	Domain	Enolase C-terminal domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13794 all species →	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009063 all species →	Biological Process	amino acid catabolic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016052 all species →	Biological Process	carbohydrate catabolic process	Interproscan
GO:0016836 all species →	Molecular Function	hydro-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000833-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000833-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

22.6Max TPM

6.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.20	9.22
polyp at pH7 6	18	17	6.15	9.89
coral polyp · control treatment	16	16	9.04	22.55
coral polyp · oil and dispersant treatment	16	16	6.79	22.06
coral polyp · oil treatment	16	16	7.72	12.73
coral polyp · dispersant treatment	16	16	5.87	13.04
Polyp	10	9	5.45	10.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.