Gene detail

Detailed information of OS493_000859-T1 in Lophelia pertusa

Genomic Location: scaffold_2:1110878...1116666
NR annotation: KAJ7387528.1, hypothetical protein OS493_000859 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001894 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01066 all species →	CDP-OH_P_transf	CDP-alcohol phosphatidyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000462 all species →	Family	CDP-alcohol phosphatidyltransferase	Interproscan
IPR043130 all species →	Homologous_superfamily	CDP-alcohol phosphatidyltransferase, transmembrane domain	Interproscan
IPR048254 all species →	Conserved_site	CDP-alcohol phosphatidyltransferase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15362 all species →	PHOSPHATIDYLINOSITOL SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003881 all species →	Molecular Function	CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006661 all species →	Biological Process	phosphatidylinositol biosynthetic process	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000859-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000859-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

38.8Max TPM

5.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.47	5.31
polyp at pH7 6	18	15	2.98	9.25
coral polyp · control treatment	16	16	7.12	23.57
coral polyp · oil and dispersant treatment	16	16	7.35	25.09
coral polyp · oil treatment	16	16	8.29	38.78
coral polyp · dispersant treatment	16	16	2.56	5.58
Polyp	10	9	3.71	7.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.