Gene detail

Detailed information of OS493_000875-T1 in Lophelia pertusa

Genomic Location: scaffold_2:1364464...1372787
NR annotation: KAJ7387544.1, ADP-ribosylation factor protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32LJ2	ADP-ribosylation factor-related protein 1 OS=Bos taurus OX=9913 GN=ARFRP1 PE=2 SV=1
Q8BXL7	ADP-ribosylation factor-related protein 1 OS=Mus musculus OX=10090 GN=Arfrp1 PE=1 SV=2
Q63055	ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus OX=10116 GN=Arfrp1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007699 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025 all species →	Arf	ADP-ribosylation factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024156 all species →	Family	Small GTPase superfamily, ARF type	Interproscan
IPR006689 all species →	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45909 all species →	ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0034067 all species →	Biological Process	protein localization to Golgi apparatus	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07952	ARFRP1; ADP-ribosylation factor related protein 1	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000875-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

38.0Max TPM

13.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.81	21.52
polyp at pH7 6	18	17	15.33	24.73
coral polyp · control treatment	16	16	16.27	37.99
coral polyp · oil and dispersant treatment	16	16	15.36	28.76
coral polyp · oil treatment	16	16	13.83	24.99
coral polyp · dispersant treatment	16	16	10.45	19.66
Polyp	10	9	11.50	26.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.99
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.