Gene detail

Detailed information of OS493_000932-T1 in Lophelia pertusa

Genomic Location: scaffold_2:1954911...1961854
NR annotation: KAJ7387597.1, HAUS augmin-like complex subunit 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006679 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06694 all species →	Plant_NMP1	Plant nuclear matrix protein 1 (NMP1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029711 all species →	Family	HAUS augmin-like complex subunit 7-like	Interproscan
IPR010604 all species →	Family	Plant AUGMIN subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14352 all species →	HAUS AUGMIN-LIKE COMPLEX SUBUNIT 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0051011 all species →	Molecular Function	microtubule minus-end binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0070652 all species →	Cellular Component	HAUS complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16590	HAUS7, AUG7, UIP1; HAUS augmin-like complex subunit 7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000932-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

27.8Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.39	5.10
polyp at pH7 6	18	16	2.95	6.14
coral polyp · control treatment	16	16	4.04	27.82
coral polyp · oil and dispersant treatment	16	15	1.91	8.22
coral polyp · oil treatment	16	16	2.36	4.84
coral polyp · dispersant treatment	16	15	1.48	3.25
Polyp	10	9	3.86	7.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.98
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.