Gene detail

Detailed information of OS493_000934-T1 in Lophelia pertusa

Genomic Location: scaffold_2:1988724...1995335
NR annotation: KAJ7387599.1, YmL15 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKT8	Large ribosomal subunit protein uL15m OS=Gallus gallus OX=9031 GN=MRPL15 PE=2 SV=1
Q0VC21	Large ribosomal subunit protein uL15m OS=Bos taurus OX=9913 GN=MRPL15 PE=1 SV=1
Q6DGM3	Large ribosomal subunit protein uL15m OS=Danio rerio OX=7955 GN=mrpl15 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005029 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00828 all species →	Ribosomal_L27A	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030878 all species →	Family	Large ribosomal subunit protein uL15	Interproscan
IPR036227 all species →	Homologous_superfamily	Large ribosomal subunit protein uL15/eL18 superfamily	Interproscan
IPR005749 all species →	Family	Large ribosomal subunit protein uL15, bacterial-type	Interproscan
IPR021131 all species →	Domain	Large ribosomal subunit protein uL15/eL18	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12934 all species →	50S RIBOSOMAL PROTEIN L15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02876	RP-L15, MRPL15, rplO; large subunit ribosomal protein L15	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000934-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

64.3Max TPM

17.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.95	38.05
polyp at pH7 6	18	18	19.21	37.11
coral polyp · control treatment	16	16	21.34	64.35
coral polyp · oil and dispersant treatment	16	16	17.04	46.18
coral polyp · oil treatment	16	16	18.31	32.89
coral polyp · dispersant treatment	16	16	9.73	21.08
Polyp	10	10	23.96	41.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.15
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.24
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	41.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	36.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.42

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.