Gene detail

Detailed information of OS493_000951-T1 in Lophelia pertusa

Genomic Location: scaffold_2:2180984...2206800
NR annotation: KAJ7387616.1, hypothetical protein OS493_000951 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_000951-T1

ATGGCGGCCTCCGCTGTAGAGGAAAGCGAAGTCGTGACAACTTTGTCAGTCAATTTGGGAATTTCTAAGGAGGTTATTGCTCAGTTTGCCAGCCTGAATGAAGATGCAGCCTCAGTTCTACTAAAGGTTAAACAGGTTTTGGATGAAAACTCGTCTAAGGATGAAAAATATCGCTCAGACATGAGCACTCTCCGCCGTGCACGTGTGGACGCAGAACAACAGTTCAGCCAGATAGAGAAGCAGCTTATTTCCTGCAATGCTAGACTTGAGTCAGAACAGAAGCAACATGAAAGACTCCAGAAAGAACATGAAGAAACCGTTGCCACACTTGCAGAAAAGCAAAAGAGACTCCAAGAAGTAGAGAGTATAAAGGAAGATGCCTCTACAAATTATTCACGAGTGTCGCGACTCAATGAACAGCTTGAGTCTGAGAAACTAGAACTGTTGTCTGTAGTCGAGAGGAAAAACCAGGAGATAGACAGATTAAATGGAGCCAATTCTACCAAATGTGAGGCCCAGGCCAAACTTGATCAAATTCAAAGTCAGGAAACATCTTTTAAGTTCCGCGAAAAGAGAATTGAGCAAGAAAAGGAGCTCATTGAAAGACAGAATAAATGGCTGAGTGAAGAACTAAAAACCAAAACAGATGAGTTGGTCAAACTTCGCAAGGAAAAGTCTTCTCAAGTATTGGAACTTCAATCACAGTTAGATGAAAGAACGGAAGAGCTTTCTCATCTCAAGACATCAGCAGAAACATTAAAGGAAAGCAATACTGAGCTGAACAACAAGGTGGAAAGCTACATGCACAAGTTAAAGGAGGCTCGTGAGCAGTTAGTTAAGACAGAAGACCACTTTAAAACAGAGCTGGCTTCACAGTCAAAGCTGGCAGTACTTTATAAGGACAGTGCCGATGAAGCAAAGAGAAAAAGTGAGGAATTGTTGACGGCATTTGAAGAACTTCAAAAATTACTGAAAGAATCCAATGAAGGTCGTCTTGATCTTGACAGTAGATTAATGGAACAGGAAAATTCACATGCAGAGAGAGTCAGAGAATTTGAGGAAAGGATCAGTAAATTGGATAAGGAGCTTGAGAATGCCAATGATTTGTTAGCTGCTGCAAGGCAAAGAGGTGCAGCACCTCTAACCCCAGCAGAGTTGAGTACTTTTTCACCAACTGCTGCGGCAACAAGTTCCTTTATGAAGTCTGGAATGACACTTACTCAGATTTATAGCCAATATGTGGAAGTCTCAGATGCATTGCAACAAGAAAAAGATGAGAACATCAGACTTAAACAGTACTTGGATCAGATACTTAAGGAAATTGAAGAGAAGGCTCCTGTCCTTCAGCAACAGAGAAAAGACTTTGAACAGGCATTACATAGTGTGGATCAACTCTCGAGGAGATTAGATTCAGCACTTGTGGAAAATGAAGAATCTAAAGTATTTGCTGAAGAGGCTGCCAAGAAGAGCGAGCATCTGAAGAGAGAAAATGACAGACTGAGGAACCTGTCTGCTGATTTGAGTCAACAGGTCCAGGTACTCTTGAAAGAATGTGAGGAAGCAAGAGGAGGTGTGGTCAGCTCTGAGCCCAGTGTGCACCCCATGTCTAGTACGGAGGTCACTAGCTCATCACAAGTCATCTCTGAACACCTTGTTACTTTTAGGAGTATAGAGGAACTTCAGCAGCAGAATCAGAAGCTGCTGGGAGTTATCAGAGAATTAAGTGAGGAAAAAGAAAAGAGGGAAGGCGATAACATAATTGACGGGTTGCAGAAGAAGTTAGACGGTTCATTGAAGGAAGTGGAAGGTCTAAAGGAATCAAGGGAAAGACAAATGCATATGGTTGAGGCTGTCATTAGGCAGCGCGACATGTACCGTGTCTTGTTAGCCAACAGTGGTCAAACGCCGATACCAACAACTGATGTTGACCTGTCTGTGTTAACGTCCACTCCATTGCTGAAGACTCCTGACAAGTCAGGTGCTGAATTGGAGGAAACTAAAGTGGCACTGAAAGAACTGCAGAGACACTTTGAAACTTACAAGACTGACAGAGTACAAGCTGAGGAGAAATCAAGTGAAAGGCTGGATAAATTACAAAGTGAAAACCTTGAGTTAAATGGCAATAATGCCAGGTTGAAATCTCAGCTGGAGTTTGCTGAGGAGCGGCATGCAATGCTCAAGTCAAACTCAGAAGCCTTCAAGAAGGAAGCCTCCGCTGCTTCTGAGAAGTCGCGGAACTTACAGGTGGCAATAAGCAAGATACAAGCAACTCTTGACAGTGTATCACAGGATATGACTAACACCAAGGAAAAATGTAACAAGCTTGAGGTAATGTGCGAAAACGTGAAAGCTGAAAAAGCTCTGATGAAGGAGTCGGAAGTTCGCTTGATGCAGGAGAACAAAAGCTTGTTGGAACATCAGAAATCCCAAAATGTTCTGGTTACAAATCTTCAGACTTTACAGAATAACCTGGAAAGATCAGAGTTTGAAGCGAGAACAAGACTTGGCTCTCAAGTGGAGACTTTACAGCGTGAGGTGAATCTACTGAAGAGGAAGCAGGAATCTGAAGACAAACACCACAAGAGTGTAATTGGCACATGGGAGAACCGTGTTCAAGAACTGCAGTCACAACTGAATACTGAGATCAAGACACATCAACAGGCCAGAGAACAGCTGCTAACATCAACCAGGGACGTTGATTCAGTACAGCTAAGATGCACCCAAGCTGAAAAACAACTGCAGGCCACCGAGAAACGTTTAGCCGACATTTTAGAGAAAGAAACAGATTCTCTTCAAGAAGCTGAAGAAGAGAGGATTAGAAAAGAGACTACAGAAAAATACACTGTCAAGATTCAAGAATTTGAGTTTAAACTGCACACCACAGAGGCTAAAGTCAAGGGTCTTGAGGAACAGTTACAGCAAGCTAAGCAACATGCAGAACAGTTTAAGTCCATGTCAGAAGCTAATGAATCAGCATTGGGTGACTTAAACAAGACAAGTGATGAATTTAAGCGAACTACAGAGAGTAAACTCCAGACCGCAGAGCAAGATGTCACACAATACAAGTCTCGGGTCACCACTCTTCAAGCCCTGAACCAAGATCTGAATGCGACAAGAGCGAAACTGGCAAGAGAAGCCGAGTCACAGACCAAGAGCTTACGTGACATGTTGAGTAAGGTTAAAGCGGAGTTAGAGGAAGCGTTAAAGAAAACACAGACATCATCTGCAGCTGAACTGACTGCAAAGGAAGAACTTAAGGAACAAGCTCTCTTGGCTACAGAGGCTCAAGATAAATATGAGAGAGAACTTGTCCTTCATGCCAATGATGTGCAAGCTTTGACTTCAGTTAAGGAACAGTTTCAAGAACAGAGCAGCAAATTTCAAGAGATAGAAGACCGTGCTTTGGCAGCTGAACAGAAGCTACAAGAATACACAAGTTCTTGGGAAGATCAGAAAAAGGCCAAGGCTTCAGAGGCAAAGAAAATTGAGGCTCGCTGCGCTGACCTTGTCAATCAGAACTCCACGTTGCATAGTCAGTTAGAAAAGCTTAGTGCCCAGCTGGCTGCCAGTAAACGGTCGCCAGTTCAAATTTCCCTTCCCCAAAAAGAGGGTGTGGCAGCTGAAGGGGGTGAAGAATCTAAAAAGACTGTTGACGAACTTTGGGAGATCATCAGGTTTGTCCGCCGAGAAAAAGAAATTTCCGAGACAAAATGTGAACTATCACAGTCAGAAAGCATTCGCTACCAGCAACGCTGTGAATACTTGAAGGTCAAATAG

Transcript

OS493_000951-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12270	Nucleoprotein TPR OS=Homo sapiens OX=9606 GN=TPR PE=1 SV=3
F1MA98	Nucleoprotein TPR OS=Rattus norvegicus OX=10116 GN=Tpr PE=1 SV=1
F6ZDS4	Nucleoprotein TPR OS=Mus musculus OX=10090 GN=Tpr PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002126 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07926 all species →	TPR_MLP1_2	TPR/MLP1/MLP2-like protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012929 all species →	Domain	Nucleoprotein TPR/MLP1	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18898 all species →	NUCLEOPROTEIN TPR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:1901673 all species →	Biological Process	regulation of mitotic spindle assembly	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000951-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_000951-T1 global co-expression network