Gene detail

Detailed information of OS493_000958-T1 in Lophelia pertusa

Genomic Location: scaffold_2:2295147...2295479
NR annotation: KAJ7387623.1, hypothetical protein OS493_000958 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000625 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04749 all species →	PLAC8	PLAC8 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006461 all species →	Family	PLAC8 motif-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15907 all species →	DUF614 FAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_000958-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000958-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000958-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,523.4Max TPM

859.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	765.94	1,269.55
polyp at pH7 6	18	18	734.66	1,033.53
coral polyp · control treatment	16	16	1,034.62	1,509.47
coral polyp · oil and dispersant treatment	16	16	1,018.78	1,523.35
coral polyp · oil treatment	16	16	960.96	1,467.67
coral polyp · dispersant treatment	16	16	762.31	1,222.29
Polyp	10	10	710.18	1,231.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,269.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,173.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,009.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	996.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	751.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	732.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	714.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	701.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	690.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	679.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	676.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	675.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	647.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	630.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	625.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	610.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	603.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	597.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,033.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,012.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	990.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	972.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	911.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	909.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	842.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	804.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	695.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	693.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	674.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	665.45
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	613.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	594.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	582.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	539.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	349.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	340.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,509.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,313.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,288.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,227.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,171.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,150.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,146.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,118.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,116.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,080.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,024.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	907.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	883.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	836.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	471.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	305.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,523.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,346.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,216.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,208.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,187.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,182.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,116.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,103.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,060.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,045.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	954.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	906.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	807.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	603.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	600.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	437.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,467.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,432.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,236.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,221.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,195.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,151.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,114.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,073.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	929.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	913.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	911.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	791.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	641.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	569.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	446.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	279.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,222.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,136.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,077.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,068.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	944.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	898.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	877.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	754.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	742.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	697.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	662.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	604.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	591.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	527.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	244.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	146.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1,231.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,080.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	769.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	746.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	677.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	629.63
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	581.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	525.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	505.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	354.75

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.