Gene detail

Detailed information of OS493_000959-T1 in Lophelia pertusa

Genomic Location: scaffold_2:2305850...2306374
NR annotation: KAJ7387624.1, hypothetical protein OS493_000959 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011653 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR051573 all species →	Family	Ankyrin repeat and SOCS box domain-containing protein	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24136 all species →	SOWAH (DROSOPHILA) HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0045732 all species →	Biological Process	positive regulation of protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_000959-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_000959-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

10.9Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.65	8.60
polyp at pH7 6	18	18	5.44	9.35
coral polyp · control treatment	16	16	3.62	7.42
coral polyp · oil and dispersant treatment	16	15	1.13	3.80
coral polyp · oil treatment	16	16	2.89	8.59
coral polyp · dispersant treatment	16	16	4.06	10.92
Polyp	10	10	3.56	9.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.51
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.69
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.85

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.