Gene detail

Detailed information of OS493_001015-T1 in Lophelia pertusa

Genomic Location: scaffold_2:3117833...3119204
NR annotation: KAJ7387677.1, hypothetical protein OS493_001015 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16354	Phospholipase A2 isozymes PA3A/PA3B/PA5 OS=Heloderma suspectum OX=8554 PE=1 SV=3
P80003	Acidic phospholipase A2 PA4 OS=Heloderma suspectum OX=8554 PE=1 SV=2
Q9BMK4	Phospholipase A2 OS=Apis cerana cerana OX=94128 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05826 all species →	Phospholip_A2_2	Phospholipase A2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036444 all species →	Homologous_superfamily	Phospholipase A2 domain superfamily	Interproscan
IPR016090 all species →	Domain	Phospholipase A2 domain	Interproscan
IPR033113 all species →	Active_site	Phospholipase A2, histidine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12253 all species →	RH14732P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0050482 all species →	Biological Process	arachidonate secretion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01047	PLA2G, SPLA2; secretory phospholipase A2	EC:3.1.1.4	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001015-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

17.0Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.55	9.61
polyp at pH7 6	18	17	4.90	15.91
coral polyp · control treatment	16	16	3.96	8.72
coral polyp · oil and dispersant treatment	16	15	3.00	8.65
coral polyp · oil treatment	16	16	5.02	17.02
coral polyp · dispersant treatment	16	16	2.40	6.41
Polyp	10	9	3.30	9.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.