Detailed information of OS493_001074-T1 in Lophelia pertusa

Genomic Location: scaffold_2:3875460...3880786
NR annotation: KAJ7387731.1, endodeoxyribonuclease [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y5K1Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1
Q9WTK8Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2
A2XFC1DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004479 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21180
all species →		TOP6A-Spo11_ToprimTopoisomerase 6 subunit A/Spo11, Toprim domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002815
all species →		FamilySpo11/DNA topoisomerase VI subunit AInterproscan
IPR013048
all species →		FamilyMeiotic recombination, Spo11Interproscan
IPR036078
all species →		Homologous_superfamilySpo11/DNA topoisomerase VI subunit A superfamilyInterproscan
IPR034136
all species →		DomainTopoisomerase 6 subunit A/Spo11, TOPRIM domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10848
all species →		MEIOTIC RECOMBINATION PROTEIN SPO11Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000228
all species →		Cellular Componentnuclear chromosomeInterproscan
GO:0000706
all species →		Biological Processmeiotic DNA double-strand break processingInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003918
all species →		Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005694
all species →		Cellular ComponentchromosomeInterproscan
GO:0007131
all species →		Biological Processreciprocal meiotic recombinationInterproscan
GO:0042138
all species →		Biological Processmeiotic DNA double-strand break formationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_001074-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_001074-T1 global co-expression network
TOP