Gene detail

Detailed information of OS493_001088-T1 in Lophelia pertusa

Genomic Location: scaffold_2:4462418...4462765
NR annotation: KAJ7387745.1, negative regulation of B cell receptor signaling pathway [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010357 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15991 all species →	G_path_suppress	G-protein pathway suppressor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026094 all species →	Family	G protein pathway suppressor 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22654 all species →	G PROTEIN PATHWAY SUPPRESSOR 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001088-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001088-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

18.9Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.70	9.98
polyp at pH7 6	18	18	7.06	12.79
coral polyp · control treatment	16	16	10.37	18.94
coral polyp · oil and dispersant treatment	16	16	8.83	13.15
coral polyp · oil treatment	16	16	9.47	14.88
coral polyp · dispersant treatment	16	16	6.51	11.51
Polyp	10	9	4.63	7.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.91
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.