Gene detail

Detailed information of OS493_001100-T1 in Lophelia pertusa

Genomic Location: scaffold_2:4599245...4610682
NR annotation: KAJ7387757.1, antigen p97 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29443	Serotransferrin OS=Bos taurus OX=9913 GN=TF PE=2 SV=1
Q9R0R1	Melanotransferrin OS=Mus musculus OX=10090 GN=Meltf PE=2 SV=1
P80426	Serotransferrin-1 OS=Salmo salar OX=8030 GN=tf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00405 all species →	Transferrin	Transferrin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001156 all species →	Domain	Transferrin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11485 all species →	TRANSFERRIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_001100-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001100-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001100-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

19.5Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	4.44	8.44
polyp at pH7 6	18	12	4.04	7.69
coral polyp · control treatment	16	16	6.34	11.20
coral polyp · oil and dispersant treatment	16	15	6.97	17.51
coral polyp · oil treatment	16	16	7.45	16.01
coral polyp · dispersant treatment	16	16	6.62	16.64
Polyp	10	9	9.37	19.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.39
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.20
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.54
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.60
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.