Gene detail

Detailed information of OS493_001112-T1 in Lophelia pertusa

Genomic Location: scaffold_2:4839079...4846597
NR annotation: KAJ7387769.1, histidine permease [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VD75	Huntingtin-interacting protein 1 OS=Mus musculus OX=10090 GN=Hip1 PE=1 SV=2
O00291	Huntingtin-interacting protein 1 OS=Homo sapiens OX=9606 GN=HIP1 PE=1 SV=5
Q9JKY5	Huntingtin-interacting protein 1-related protein OS=Mus musculus OX=10090 GN=Hip1r PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003866 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01608 all species →	I_LWEQ	I/LWEQ domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002558 all species →	Domain	I/LWEQ domain	Interproscan
IPR030224 all species →	Family	Sla2 family	Interproscan
IPR035964 all species →	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10407 all species →	HUNTINGTIN INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0030479 all species →	Cellular Component	actin cortical patch	Interproscan
GO:0032051 all species →	Molecular Function	clathrin light chain binding	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0043325 all species →	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001112-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001112-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

37.0Max TPM

17.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.94	20.88
polyp at pH7 6	18	17	14.56	22.65
coral polyp · control treatment	16	16	21.82	29.40
coral polyp · oil and dispersant treatment	16	16	18.32	36.99
coral polyp · oil treatment	16	16	23.09	33.71
coral polyp · dispersant treatment	16	16	15.11	23.58
Polyp	10	10	16.15	25.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.98
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.12
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.83
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.