Gene detail

Detailed information of OS493_001114-T1 in Lophelia pertusa

Genomic Location: scaffold_2:4861347...4900036
NR annotation: KAJ7387771.1, histidine permease [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_001114-T1

ATGCCCCTTCCAACACAAGTCATTATGTGTTGGAAGGCAATGCTGCTTATACACAAACTGTTAAGAGAAGGACATCCAAATGCTTTGAAGGAATCCCTTAAATACAAGCAGATGTTGAAGGACATGAAAGAATTCTGGAAACATTCAAACAAGGGAGGATATGGCTGGTTAATTCACACCTACCTTGCTGTACTGATAGCAAAGCTGGACTTCCACAACAAGAACGACTCTGTTCCTGGCACTCTTCGTAATAGTGATGGTGGGCCACTCGTATATTCTGGAACTGATGTTAATGATTATTTTGAATTGTCAGTGGATATCTTTGATTACATGGACACATTAGTGGACCTCGAGAAAAGAATCTACAGCACACTAGATCCATTCCGTGCAAATTCTCAACTCCAGGCTGTGCAGTGTAGGATTTGTCCATTCCCTGTCATAATCCAGGAATGCGGTGGCCTCTATGACATTGTCGTGGACATAATGTATAAATTACATGCAAGATTGCCAGCAGACACTTTGACTGGACACAGAGAAAGATTTTATTCCCACTTTGCCGAATTAAAGAAGTTCTTCTTTGATGCCGGAAACATGGGTTATGTAAGAGCTTTGGTTCCTATACCTGTGCTACCCCAGAATCCTCCATCTTTTACATTATCTGACCCCAAGCCAACTTTGGCCAGATCCACAAGTGATGAAGGACCTCTGCGAAAATTAGCACCAACTGAAGACTTGAAGCGTCAGAGCCTAATGGAGCCACTCACTGTTCCCATGACAACAGAACCATTAGTTTATGCAACTCCTCAGACTCCAGAGGCTGATATATTAGGAATCAACTCTACAGATGGCCCCGCACCTGATAACAGGGACCTAATAATCTATCAGCTGCGACAGGAAATTGCAGGACTAAAGCTGACATTAGAGCGTCAAGAAAAGCATGCAAAGGCTGTTGAAGATTCTCTACGGTCACAGATAACAAGGCTTGCTGAAGAACTGGATGAATACAAGACAATTGCTGAAAAAGCCTGCGAGGAAAATGTTTTGTTAAGAAAAGACCTTGATAGTAAAGAGGATGACAAGAAAGAACAGAAAGGCCCAGCTGAAGAGAAATTTAACAAACTTAAAGGAATGTATGGAAAACTGCGAGAAGAACACATCCAGCTTTTAAGAACTAATGCTGAGGTAAAGCAAAAACTGAGTGCTTCTGAAAAGGACAAAGAGGATTTAAGTCAAGTAAATGAAAGACTGCAACAGGAAGTAGATGATAAGTCAACAGAACTTCTCCAAGTATTTCAAAAAGCAGAAATGGCTGAACAGGATGGCAAGAGAGCTGGCTCAGATGAAATCGAAAGACTGACAAATGAACATGATGAAAAGATTTCATCCCTCAGAGCTGAGCTGAAGGCATTGAAAACAGAGAAAAATGAAACAGCGGAAGCAAGGAAATTGGCTGAAGAACAAATAGAAACAATCAGAAAAGATCACAAAGAAAAGATTGTAGCACTCAGCAGTGATCTATCACATGTTCATAAGAGCAGAACAGATGAAGAGGAAGCGAAAAGAACCGCCCAGGAAACCATAGAAAGAGAAAGAAAGGAACATGAAGATAAGATTTTGTCTCTCGCGGCGGAGCTGGAGGCGCAGAAAAAGGAAAAAGACGAAACAGCACAAGCAAGAAAAACAGCTGAAGAAACAAATAGAAGCAATGAGAAAAGATCACGACGAAAAGCACTCAGCAGTGATCTATCAGATGTTCACAAGAGCAGAAAAGATGAAGAGGAAGCGAAAAGAGCAGCCCAGGAAACCATAGAAAGAGAAAGAAAGGAGCATGAAGAAAATGTAACTGAGCTTGAGAGAAAGAGACATGAAGATATTAGAAAAGAAAAGCAAGACCTAGTGGGTATGGCGATAGGGACAGCAGAAAGAACAATCCAAGACTCTTTAGATCAGTTTCACAATCCAAAACATAGCTCAACGACATGTACTGCAGATTACTTGTTGAGCAGAATCGAGAGTCTTCCAGGCGTTGTTGATGAGCTTAATTCAAAGTTTGCATCATATAAGCAAGATCATAAAGATGCCATTCCATGTGCATGCTGTTTTGGTTCGTTCTCCCATCAACTCAGTGAATGCATTCTGAATGCCAAGGCCACTTCTCACATGGCGCCCACTCAAGAAGCTGCAGATCTTCAGTCCCTCAGTGAATCTGCTGGCATGGCATCTCTTGAACTGTTACAACTTTATAAACAGAACGATCCAGATCTAAATGCTCTTGCTGATAAAGTGAATGTGGTGAAGAAGTATATCACAGATATTACCAAGGTGGCTGAGGCTCTTGCGCCCAAGGAGAAGGACAGTGTAGCTAGTATTGGTAGTGAAGTCGATGATGAAATTAATGCCACTGCCGAGCTTGTTGCAGATTCAGCGGCCAGAATTGAGGAAATGATTAACAAAACAAGAGAGAAATACAGTGGTGTCCAACTTGAAGTGAACGGAAGAATTCTGGATTCCTGCACTGCCCTGATGGAGGTAATTTACCATTAA

Transcript

OS493_001114-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75146	Huntingtin-interacting protein 1-related protein OS=Homo sapiens OX=9606 GN=HIP1R PE=1 SV=2
Q9JKY5	Huntingtin-interacting protein 1-related protein OS=Mus musculus OX=10090 GN=Hip1r PE=1 SV=2
O00291	Huntingtin-interacting protein 1 OS=Homo sapiens OX=9606 GN=HIP1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003866 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07651 all species →	ANTH	ANTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR002558 all species →	Domain	I/LWEQ domain	Interproscan
IPR011417 all species →	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan
IPR013809 all species →	Domain	ENTH domain	Interproscan
IPR035964 all species →	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR030224 all species →	Family	Sla2 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10407 all species →	HUNTINGTIN INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0030479 all species →	Cellular Component	actin cortical patch	Interproscan
GO:0032051 all species →	Molecular Function	clathrin light chain binding	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0043325 all species →	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001114-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_001114-T1 global co-expression network