Gene detail

Detailed information of OS493_001115-T1 in Lophelia pertusa

Genomic Location: scaffold_2:4942872...4963660
NR annotation: KAJ7387772.1, hypothetical protein OS493_001115 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LY80	Transmembrane protein 120B OS=Danio rerio OX=7955 GN=tmem120b PE=2 SV=1
Q63ZG0	Transmembrane protein 120B OS=Xenopus tropicalis OX=8364 GN=tmem120b PE=2 SV=1
Q5EAX9	Transmembrane protein 120B-A OS=Xenopus laevis OX=8355 GN=tmem120b-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006283 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07851 all species →	TMPIT	TMPIT-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012926 all species →	Family	Ion channel TACAN/TMEM120B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21433 all species →	TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26608	TMEM120; transmembrane protein 120	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001115-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

56.2Max TPM

22.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.72	38.03
polyp at pH7 6	18	18	24.13	45.41
coral polyp · control treatment	16	16	25.17	45.80
coral polyp · oil and dispersant treatment	16	16	21.18	56.23
coral polyp · oil treatment	16	16	24.18	41.06
coral polyp · dispersant treatment	16	16	21.93	44.95
Polyp	10	10	14.03	22.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.53
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.