Gene detail

Detailed information of OS493_001154-T1 in Lophelia pertusa

Genomic Location: scaffold_2:5697878...5702287
NR annotation: KAJ7387809.1, reductase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68ER2	Carbonyl reductase family member 4 OS=Xenopus tropicalis OX=8364 GN=cbr4 PE=2 SV=1
Q6NUE2	Carbonyl reductase family member 4 OS=Xenopus laevis OX=8355 GN=cbr4 PE=2 SV=1
A4IFA7	3-oxoacyl-[acyl-carrier-protein] reductase OS=Bos taurus OX=9913 GN=CBR4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001953 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42760 all species →	SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11539	CBR4; carbonyl reductase 4 / 3-oxoacyl-[acyl-carrier protein] reductase beta subunit	EC:1.1.1.-	Fatty acid biosynthesis	ko00061	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_001154-T1 global co-expression network