Gene detail

Detailed information of OS493_001178-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6146502...6163994
NR annotation: KAJ7387831.1, Tectonic-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005645 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07773 all species →	TCTN_DUF1619	Tectonic domain DUF1619	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040354 all species →	Family	Tectonic	Interproscan
IPR011677 all species →	Domain	Tectonic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14611 all species →	TECTONIC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0036038 all species →	Cellular Component	MKS complex	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:1904491 all species →	Biological Process	protein localization to ciliary transition zone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001178-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001178-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

20.2Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.01	6.46
polyp at pH7 6	18	17	3.86	6.22
coral polyp · control treatment	16	16	5.24	20.21
coral polyp · oil and dispersant treatment	16	16	3.68	13.29
coral polyp · oil treatment	16	16	4.32	8.31
coral polyp · dispersant treatment	16	16	3.80	7.95
Polyp	10	9	1.95	3.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.