Gene detail

Detailed information of OS493_001188-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6221232...6225091
NR annotation: KAJ7387841.1, Mitochondrial import inner membrane translocase subunit Tim10 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GQ52	Mitochondrial import inner membrane translocase subunit Tim10-B OS=Xenopus laevis OX=8355 GN=timm10-b PE=3 SV=1
Q6P321	Mitochondrial import inner membrane translocase subunit Tim10 OS=Xenopus tropicalis OX=8364 GN=timm10 PE=3 SV=1
P62072	Mitochondrial import inner membrane translocase subunit Tim10 OS=Homo sapiens OX=9606 GN=TIMM10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010118 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02953 all species →	zf-Tim10_DDP	Tim10/DDP family zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035427 all species →	Homologous_superfamily	Tim10-like domain superfamily	Interproscan
IPR004217 all species →	Domain	Tim10-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11038 all species →	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0045039 all species →	Biological Process	protein insertion into mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17778	TIM10; mitochondrial import inner membrane translocase subunit TIM10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001188-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

146.9Max TPM

44.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.88	79.22
polyp at pH7 6	18	18	62.44	146.86
coral polyp · control treatment	16	16	45.03	85.92
coral polyp · oil and dispersant treatment	16	16	34.09	122.52
coral polyp · oil treatment	16	16	37.38	73.93
coral polyp · dispersant treatment	16	16	23.14	66.12
Polyp	10	10	69.07	115.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.97
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	146.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	123.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.93
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.12
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	115.53
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	111.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	105.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	87.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	72.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	53.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	48.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	39.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.