Gene detail

Detailed information of OS493_001190-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6246214...6257555
NR annotation: KAJ7387843.1, N-alpha-acetyltransferase 25, NatB auxiliary subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14CX7	N-alpha-acetyltransferase 25, NatB auxiliary subunit OS=Homo sapiens OX=9606 GN=NAA25 PE=1 SV=1
Q8BWZ3	N-alpha-acetyltransferase 25, NatB auxiliary subunit OS=Mus musculus OX=10090 GN=Naa25 PE=1 SV=1
Q6QI44	N-alpha-acetyltransferase 25, NatB auxiliary subunit OS=Rattus norvegicus OX=10116 GN=Naa25 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004374 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09797 all species →	NatB_MDM20	N-acetyltransferase B complex (NatB) non catalytic subunit	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019183 all species →	Family	N-alpha-acetyltransferase 25, NatB auxiliary subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22767 all species →	N-TERMINAL ACETYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017196 all species →	Biological Process	N-terminal peptidyl-methionine acetylation	Interproscan
GO:0031416 all species →	Cellular Component	NatB complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001190-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001190-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

25.1Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.61	14.28
polyp at pH7 6	18	16	9.95	18.55
coral polyp · control treatment	16	16	15.07	24.87
coral polyp · oil and dispersant treatment	16	16	13.52	23.58
coral polyp · oil treatment	16	16	12.40	19.12
coral polyp · dispersant treatment	16	16	10.39	25.13
Polyp	10	10	7.35	14.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.23
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.81
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.02
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.