Gene detail

Detailed information of OS493_001192-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6280245...6282220
NR annotation: KAJ7387845.1, N-alpha-acetyltransferase 25, NatB auxiliary subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14CX7	N-alpha-acetyltransferase 25, NatB auxiliary subunit OS=Homo sapiens OX=9606 GN=NAA25 PE=1 SV=1
Q8BWZ3	N-alpha-acetyltransferase 25, NatB auxiliary subunit OS=Mus musculus OX=10090 GN=Naa25 PE=1 SV=1
Q6QI44	N-alpha-acetyltransferase 25, NatB auxiliary subunit OS=Rattus norvegicus OX=10116 GN=Naa25 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004374 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_001192-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22767 all species →	N-TERMINAL ACETYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017196 all species →	Biological Process	N-terminal peptidyl-methionine acetylation	Interproscan
GO:0031416 all species →	Cellular Component	NatB complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001192-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001192-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

10.3Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.83	4.48
polyp at pH7 6	18	16	3.29	7.82
coral polyp · control treatment	16	16	5.54	10.28
coral polyp · oil and dispersant treatment	16	16	5.21	8.10
coral polyp · oil treatment	16	16	3.65	8.22
coral polyp · dispersant treatment	16	15	4.28	9.08
Polyp	10	9	1.28	2.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.