Gene detail

Detailed information of OS493_001213-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6480042...6486491
NR annotation: KAJ7387865.1, Alsin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001259 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003409 all species →	Repeat	MORN repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46613 all species →	RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_001213-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001213-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001213-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

39.8Max TPM

10.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.32	16.30
polyp at pH7 6	18	15	7.75	25.77
coral polyp · control treatment	16	16	15.03	39.83
coral polyp · oil and dispersant treatment	16	15	8.75	20.05
coral polyp · oil treatment	16	16	12.32	33.52
coral polyp · dispersant treatment	16	16	13.95	31.32
Polyp	10	8	6.08	16.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.77
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.